PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008226618.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 335aa    MW: 36680.7 Da    PI: 4.5148
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008226618.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331.1e-10146188855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ErrRR r+++++  Lr+l+P+      +K++Ka+i+  Av Y+++Lq
  XP_008226618.1 146 SERRRRGRMKERLYALRSLVPNI-----TKMDKASIVGDAVLYVQDLQ 188
                     6*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.186138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-16140204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-17140205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-14144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-8146188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.96E-7153190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDAHGNHLGG HNINDFELQD LIDDANLDQF IDLIRGQNED PVASFDCDLM INGCFDDYNL  60
FCPASTTPGV FFGFNDAVAS DPSASFLGTL SDPSAPLLTT LPNFDGEMKG GEEDHNGEDS  120
SGTTTTTTNT NTNKRQKVDR SRTLVSERRR RGRMKERLYA LRSLVPNITK MDKASIVGDA  180
VLYVQDLQKQ AKKLKAEIES LEASLAGADD HEGYQDGSTK NPSKNKVTNN TNLVSKGIIQ  240
IDVSQVEEKG FYVKVACNKG DGVAAALYKA LESFTSFNVQ SSNLNTVSTD RFELTLALNV  300
KEGEQDIINL PNLKLWVTGA FLNQGFELAS WFSAQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226618.10.0PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
SwissprotQ0V7X42e-96FIT_ARATH; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLM5VXF90.0M5VXF9_PRUPE; Uncharacterized protein
STRINGVIT_06s0061g00720.t015e-98(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36793358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.12e-73FER-like regulator of iron uptake